Detailed information on CNT0002309 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4IKF6|SPNS3_ARATH, E-value = 1e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008022, E-value = 7e-10 (S. tuberosum)

Expression of CNT0002309

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.1570.1260.1280000.14700.1540.6140.1340.7290.2520.430.869leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.95

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MCTSMYLLLVNGDYLARVYFSFMLHHLVLNVF

>peptide 2 (79 aa)
MAMSAVAIHIFVDVPSSPLVGVLQEYFCIVWIDLMKTVNIKYQTLKGQTPCRCFKRRLEKHQHLLLNPNNEFLLMPDQT*

>peptide 3 (96 aa)
MFACNFLFGSCELCMFTLCYTKFEASIYGYVCCCYSYICRCTFLASCWSSPGIFLHSVDRFDEDSEHQVSNVERSNTMPLLQEKTGETSASPAQSQ*

>peptide 4 (31 aa)
MLVSGDNAFCSFFSVSISMQSISLILYINLS*

Sequence

>CNT0002309
GCTTATCATCTATGAATATTTTAGCAACTCTGATATTGTCAAGTTAAATTCTTGATTAATGATTATGTTTCTAAGTAAAATCACTTCTATGTTTGGGAAA
TTAGATGAAAATTTGCTCTCTGAGAACTAAGTCATCCTAGGGTTGGTTTGTCTTTTGAATTTTATGCTTGTTTCAGGGGACAATGCTTTTTGTTCTTTTT
TTTCCGTATCTATTAGCATGCAGAGTATATCCCTGATTCTTTATATCAATTTGTCTTAATAATTTTATCATGAAACTTGAAAGATAATCATTTAATGGTA
GTATGGTACTAGTAACTAGTAACTACTGAGTTTGTACAGCAAGCGTGGATTAGAAAATTCCGGACTTCTCCATTTTCTACATGAGATGAGATGGAATGTG
ATCATTAGAACTAATCTAAATTGTTGTTCCTTGGAAACCATTTCTGTAACCTGATCGGAAGTTGAAAGTTTTGCACTAAATGTTTGCTTGCAATTTTCTT
TTCGGGTCCTGTGAATTATGTATGTTTACGTTGTGTTATACCAAGTTTGAGGCCTCTATCTATGGCTATGTCTGCTGTTGCTATTCATATATTTGTAGAT
GTACCTTCCTCGCCTCTTGTTGGAGTTCTCCAGGAATATTTTTGCATAGTGTGGATAGATTTGATGAAGACAGTGAACATCAAGTATCAAACGTTGAAAG
GTCAAACACCATGCCGTTGCTTCAAGAGAAGACTGGAGAAACATCAGCATCTCCTGCTCAATCCCAATAATGAGTTTCTTTTAATGCCTGACCAAACATA
GTATTTCAGTGATAACCACTATGATGTAAATAACTTTTTTTTGTACATCCAATGTGTACAAGTATGTATTTGCTTTTGGTTAATGGAGATTATTTAGCAA
GAGTATATTTCAGTTTTATGCTTCATCATCTTGTGCTTAACGTATTTG