Detailed information on CNT0002396 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044292, E-value = 2e-09 (A. thaliana)
CNT0011351, E-value = 1e-07 (S. tuberosum)

Expression of CNT0002396

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSLQFLWLLVSLFKVCLCSEQELLAVCFSYSHNLL*

>peptide 2 (32 aa)
RFQNCWQLRFFQAVIIKYFNVSAVFVVACKFV*

>peptide 3 (35 aa)
MRMKAHKQKKKNRTLRIINIQDIKTIYQHSSNCLK*

Sequence

>CNT0002396
ATCGGTTTCAAAACTGTTGGCAATTGAGATTTTTCCAAGCTGTTATTATAAAATATTTTAATGTCTCTGCAGTTTTTGTGGTTGCTTGTAAGTTTGTTTA
AAGTTTGCTTGTGCTCAGAACAGGAACTTTTAGCTGTTTGCTTTAGTTATAGCCATAATTTGCTTTAGTTATAGCCATAACAAGTTCAAAGTGTGCAAAT
CTGAAATATATCATATCAGTTTTTGCTCCTCTCTTCTTTATACGTTTATATTTTTGCTGTCCTGATGTTCTGTTTCTGGTTTTTAACAAAAACAAATCAT
GAGAATGAAAGCACATAAACAAAAAAAAAAAAATAGAACTTTAAGGATTATTAATATACAGGACATTAAAACTATTTATCAGCATAGCAGTAATTGCTTA
AAATAATAAATTTCAGATCTAGCTGTAGCAGGATGAAACCTGAAGGCCGTTCTATTCTCTCCCCTGATTGTCCTGGGTTTATGACTGGTTTCCCACTTGG
CTGTTGAAAATGCAGCAAAAAAAATGATTAACAAGAACCTTTACTTTTCGCTAGAAATGTAATGAAACCACACTAGTTAAGAAGTACTCACTCGGGCTCT
AGAACTGGATCCAATTTGAGGATACTTCAGCATAGTCCAATCAAATACATAATCAAACTGATAACCTGTAAAAGCAAGATTTT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G32490.1 Uncharacterized protein protein coding CNT0002396 1312 494 CDS Cis
GLYMA20G35100.1 Uncharacterized protein protein coding CNT0002396 1005 493 CDS Trans
GLYMA20G35100.2 Uncharacterized protein protein coding CNT0002396 1005 493 CDS Trans