Detailed information on CNT0002598 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005317, E-value = 5e-10 (V. vinifera)

Expression of CNT0002598

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKIKYLQHGWISSLLLFKSANNSFRSTSCKSGILYLGMSDSLVRFRNS*

>peptide 2 (34 aa)
KTSVLKGKREMFACLCQSRVPGIPAAKDLNRGVT*

Sequence

>CNT0002598
GCAAAACAAGTGTGCTGAAAGGGAAGAGAGAAATGTTTGCATGCCTCTGTCAGTCCAGGGTCCCAGGAATTCCAGCAGCTAAGGATCTAAACAGAGGGGT
AACTTGAAGAGTTCGGTTCCAATATCCTGATGCAGTGAGTGTTCCAAATCCTCACCAGCTGAATGAGGCAGGAGAGTTGATCCTGTACTGTATTCCGAAC
TGCCTGGAGAGTCTTCATATAGTTCCATTTGCCTACGATAGATGCAGAAACTGTTAGATATTCGATAGCTCTCATGAAGTCATATTTTTAATGAAAATAA
AGTACCTCCAGCATGGCTGGATTTCCTCACTACTGCTCTTTAAGTCCGCCAATAACTCTTTTAGATCTACAAGTTGTAAATCTGGAATCTTATATCTAGG
AATGTCTGACTCTTTGGTTCGGTTCAGAAATTCTTGAAGAACCTGGCATAAATACACACAAGCGTTAGAACATATCTTTTTAACAATGACCTTTCTCTTA
TTTATAAGCTGAAGAACTAAGCCTTGGTGATATCAGCTGGTGATGGGCTTATCATAAACAAGTTGAGCCTTTTTATATTTGATTATATGCTAACAAGCTG
ATCTGCGAAATTATCATATTTTTTAAAGCCATTACTAA

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G05190.2 Uncharacterized protein protein coding CNT0002598 1261 531 CDS Trans
GLYMA01G05190.3 Uncharacterized protein protein coding CNT0002598 1261 531 CDS Trans
GLYMA02G02310.1 Uncharacterized protein protein coding CNT0002598 1450 529 CDS Cis
GLYMA08G40950.1 Uncharacterized protein protein coding CNT0002598 224 153 CDS Trans
GLYMA08G40950.1 Uncharacterized protein protein coding CNT0002598 428 340 CDS Trans