Detailed information on CNT0002927 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006382, E-value = 5e-06 (V. vinifera)
CNT0043564, E-value = 1e-06 (A. thaliana)
CNT0035024, E-value = 3e-07 (P. patens)
CNT0022384, E-value = 5e-06 (A. trichopoda)
CNT0031047, E-value = 1e-06 (O. sativa)

Expression of CNT0002927

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.9151.0280.67500.7850.3290.60.7240.9862.6511.2471.6181.3970.7530.203leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (73 aa)
VNFLYTMALVLKAKALRSCFEVISFTSSLNDPAPSLTLPSFASISALVSSSLSSFKDMQYHSRKQIINYQFFP*

>peptide 2 (29 aa)
MAMPHCPTGSRKATCENTDNAPPIHSSII*

>peptide 3 (37 aa)
MHHPFIAVLYDCLRIRRNHFSFCYYFFFVYKVKQVLL*

Sequence

>CNT0002927
GGTAAATTTTTTATATACCATGGCTTTGGTCTTGAAAGCAAAAGCCTTAAGGTCTTGTTTTGAGGTCATCTCTTTCACAAGTTCATTGAACGACCCTGCT
CCCTCATTAACATTACCATCATTTGCCTCTATTAGCGCTCTGGTCAGCTCATCTCTGAGTTCCTTCAAGGACATGCAGTACCATAGTAGAAAACAGATCA
TAAATTATCAATTTTTTCCTTAAAAAATTAAAAGGGTGGACAGAGTCTATAGTAGAGACCAAGTTGATAAGTACAGGGCAGTGCAAACCAAAGTTAAATG
TTTGCTACATCATGCCACGTTTATACGAAGATAATACTAGTTTAAAAGTTGTGTTTGTTTCAAAGATAGAATAACTTATTTATAATTATAAATTTTATAT
TAAAACGTGCATTGCTATAAAATGAATTGATCTAATGTTTTCTCAAACAGTCACGTAGTTGGATGATTCCATAAAAGAACAGAGACCATGAAGACCCTTG
GAAGCAGTGAAAAAAGTTGTGAAGGTAACAACTAGCAGAAAAAGGTAGAAGGGGAAGAAATAATTACACTTCAAGTGGCATGGCCATGCCCCATTGCCCC
ACAGGTAGCAGGAAAGCAACTTGTGAAAATACCGACAATGCACCACCCATTCATAGCAGTATTATATGATTGTTTACGAATTCGGAGGAATCATTTTTCT
TTTTGTTATTATTTTTTTTTTGTTTACAAGGTAAAACAAGTTTTATTGTGATGCACTGTTCTCAATTTAGATCTATTTTATTTACCCGTTGTTACGTTGT
GGATCTTTTCAAGAAGCAATGATCACTATCAAACTATTTTAATAATGTAGTATCAATAATTTTATGCCAAAAAGCTTTTAAACTTACAATGCATATCAAA
ATTATATCCCAAACAAAAGATGTCTTTTTTTATTATTTATCAGCTGCTTAAATAATATATAATGTTAGATTGTATTTCAGAAACTAACTTGAATTTTTAA
TTAAGTTGTACATGTAAACCAGTCAATTTTATTTTTTATTTTTTGAAGATAAATAGATGACCCATCCAAGAAATAACAAAGAATGGTAACTGCTATAAGG
AAAACAAATAAAATTGAAAAAAAAATGTATCACAAAAAATGATCGATTCAGGATTAGGTTTTTGTCCATAATATCCATTCTGCAACTTTTACTTTGTCTT
TTTTCCCTTTTATCACATTAATAATAACACGTACGCTCACCTGACAAACGACTTTAACCACATGAAGTGGAGATTTCAAAAGCTGATATATATATATATA
TATATATATATCACTGGATAGTTAAAGAAAAGGAAACAACAAAGTATCTCATACTGTATGTATGGATATGATCCATTCTGAAGTTTTCTAATGTTGTCAA
AATTACGTTGGATTGGGCCTCAGTTGGTGACAGTGAGACAAACCTCTTTAAGTTTATATTTATTTATGGAATAATTCACGGTACTCCATATAATTTAAGA
ATATCTCATGTTTTAAGATCATTGATAAATCTCATATCCACATATCAACTTTTTTGATTTCTATGTCGATCACGGGTATAAGAAAATAGTTTATTTTTTA
TCTATAAATTTTTTTACATTATCT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G42280.1 Uncharacterized protein protein coding CNT0002927 890 411 CDS Trans
GLYMA08G42280.2 Uncharacterized protein protein coding CNT0002927 890 411 CDS Trans
GLYMA18G12604.1 Uncharacterized protein protein coding CNT0002927 1102 412 CDS Cis