Detailed information on CNT0002946 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005386, E-value = 1e-08 (V. vinifera)

Expression of CNT0002946

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)55.71367.80873.8903.9810.1720.9450.6330.2820.3380.2450000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065707580

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IWISRAILALHSRYVWITQCDTHLCMLSTI*

>peptide 2 (102 aa)
MHDHSLQYPLPCLYCHPYSYIRMVQNLIERCILFHMSQDQCVRALAEHAGIKPLVTVTVWKELQKENKEFFRAYLQVTTPRPLFMNVFKGDQIWQEGNTG
ND*

>peptide 3 (37 aa)
MQGLSHLLLLQCGKSCKRRTRSSLEHICKLPLPGHYS*

Sequence

>CNT0002946
ATTTGGATTTCTCGAGCTATTTTGGCCCTTCACTCTAGATATGTGTGGATAACACAATGTGACACTCATTTGTGTATGCTCTCTACTATATAAAACCCCC
CCTCAAAAATATCTTCCCCTCACGTGTACTTTTTCCGTTTGTTTTCTTTCTTCTATTCCTTTTCTTTATTCTCTTTGTTTTTTCCATAACTAGCTACACG
AACACAATGCATGATCACAGTCTTCAATACCCTCTTCCTTGTTTGTATTGCCACCCTTATAGCTATATTAGGATGGTTCAAAATCTCATAGAGAGATGCA
TTCTCTTTCACATGAGCCAAGACCAGTGCGTAAGGGCACTGGCAGAACATGCAGGGATTAAGCCACTTGTTACTGTTACAGTGTGGAAAGAGTTGCAAAA
GGAGAACAAGGAGTTCTTTAGAGCATATTTGCAAGTTACCACTCCCAGGCCATTATTCATGAATGTTTTCAAAGGAGACCAAATTTGGCAAGAAGGAAAC
ACTGGAAATGATTAAGTGAATAATGGCTGAATAATCCTGCAAGGGAAAAGTGAGCTGGGTTACTCAGTCACCATTTAGTTAAAGATGGATCAGGGAAATA
TTACTGATGACTAATCATAGCCTAAGAAATTTATTAATCAACCTTATTTGGTCAGTATCTCTCTAAGGATTTGAGGATGCAGATCCTCGTTCCAAGCACA
TATAGTGGCCAATGGTTGTAGTTCTTCAATACTATAGATGCTGTTCTCGAAGCCATTAAAGAAATAAATTGTACCATACTAGTCATTAGCTTGGTGTGTA
AGGATGCAACATAACTGGTTGGAATGTTTTACAATTACTTTTTTGTAATTTTCCAAGTTTAGTTGAGATTTCCTTTGTGTGTGTGTGGATGGATCCTTAT
TAATTTCCAGCATTTTGATTGTAAAGGAAGCTGTCAAAGGTATCATTTGCAGACATTGTATAAATTTGACAGCTGTAAAGTTAATTCAAATGAACCAAAC
TTAATGATAGAAGCTTGCTTTTGCCTCTATAA