SEARCH OPTIONS

lncRNA id
CPC status
Max. peptide length
Max. expression
Potential function
Results confidence
Order results by

Current search details:

Found 2569 records in
Amborella trichopoda

CPC status:   #
Max. peptide length:   #
Max. expression:   #
Potential function:   #
Results confidence:   Show all
Order by:   lncRNA ID

Record details CANTATAdb ID Species Location CPC status (score) Swiss-Prot best hit Max. peptide length Max. expression Potential function Confidence
CNT0023422 A. trichopoda AmTr_v1.0_scaffold00023:2907282-2910861 (-) noncoding (-1.28741)- 126 6.126 Confident lncRNA
CNT0023421 A. trichopoda AmTr_v1.0_scaffold00023:3345496-3369674 (+) coding (0.156129)4e-63 (sp|Q8H8U5|IN21B_ORYSJ) 263 62.156 Low-confidence lncRNA
CNT0023420 A. trichopoda AmTr_v1.0_scaffold00023:3345496-3376704 (+) coding (0.156634)4e-63 (sp|Q8H8U5|IN21B_ORYSJ) 263 45.585 Low-confidence lncRNA
CNT0023419 A. trichopoda AmTr_v1.0_scaffold00023:3116779-3120342 (+) noncoding (-1.08242)- 60 5.957 Confident lncRNA
CNT0023418 A. trichopoda AmTr_v1.0_scaffold00023:6207627-6208929 (-) noncoding (-1.07891)- 45 5.67 Confident lncRNA
CNT0023417 A. trichopoda AmTr_v1.0_scaffold00023:3820394-3822282 (+) noncoding (-1.20991)- 131 3.633 Confident lncRNA
CNT0023416 A. trichopoda AmTr_v1.0_scaffold00023:2882801-2896914 (-) noncoding (-0.744078)3e-78 (sp|Q9ZPW2|APC10_ARATH) 221 18.088 Low-confidence lncRNA
CNT0023415 A. trichopoda AmTr_v1.0_scaffold00023:5492146-5500491 (-) coding (0.285562)1e-31 (sp|Q28FE8|ADAT1_XENTR) 397 3.856 Low-confidence lncRNA
CNT0023414 A. trichopoda AmTr_v1.0_scaffold00023:3515854-3539937 (-) coding (0.16741)0.0000000004 (sp|Q9LZ08|MOS11_ARATH) 170 34.064 Confident lncRNA
CNT0023413 A. trichopoda AmTr_v1.0_scaffold00023:1035597-1036234 (-) coding (0.237922)0.00000000003 (sp|Q944B6|TYRA1_ARATH) 193 2.911 Confident lncRNA
CNT0023412 A. trichopoda AmTr_v1.0_scaffold00023:1119459-1123772 (-) noncoding (-0.702385)- 59 27.283 Confident lncRNA
CNT0023411 A. trichopoda AmTr_v1.0_scaffold00023:4461272-4470348 (+) coding (4.38569)1e-74 (sp|Q8L9Y2|ELP6_ARATH) 261 21.495 Low-confidence lncRNA
CNT0023410 A. trichopoda AmTr_v1.0_scaffold00023:3957018-3962722 (+) noncoding (-1.16779)- 87 26.428 Confident lncRNA
CNT0023409 A. trichopoda AmTr_v1.0_scaffold00023:3957018-3962722 (+) noncoding (-1.1729)- 87 24.625 Confident lncRNA
CNT0023408 A. trichopoda AmTr_v1.0_scaffold00023:1593379-1594990 (-) noncoding (-0.433026)1e-31 (sp|O64885|BCCIP_ARATH) 138 2.256 Confident lncRNA
CNT0023407 A. trichopoda AmTr_v1.0_scaffold00023:1407842-1409622 (-) noncoding (-0.726347)- 118 39.729 Confident lncRNA
CNT0023406 A. trichopoda AmTr_v1.0_scaffold00023:2205337-2208037 (+) noncoding (-1.19733)- 100 5.046 Confident lncRNA
CNT0023405 A. trichopoda AmTr_v1.0_scaffold00023:3696206-3697223 (+) noncoding (-1.00431)- 71 25.732 Confident lncRNA
CNT0023404 A. trichopoda AmTr_v1.0_scaffold00023:1122771-1123772 (-) noncoding (-0.07144)0.0000000001 (sp|P10978|POLX_TOBAC) 59 39.67 Confident lncRNA
CNT0023403 A. trichopoda AmTr_v1.0_scaffold00023:5610779-5615288 (-) noncoding (-0.950788)- 48 4.349 Confident lncRNA
CNT0023402 A. trichopoda AmTr_v1.0_scaffold00023:4717606-4721481 (-) noncoding (-1.05619)- 69 7.816 Confident lncRNA
CNT0023401 A. trichopoda AmTr_v1.0_scaffold00023:1982507-1995624 (+) noncoding (-0.775798)- 158 6.49 Confident lncRNA
CNT0023400 A. trichopoda AmTr_v1.0_scaffold00026:28885-29533 (-) noncoding (-1.1219)- 56 5.835 Confident lncRNA
CNT0023399 A. trichopoda AmTr_v1.0_scaffold00026:25479-26490 (+) noncoding (-0.938439)- 78 9.548 Confident lncRNA
CNT0023398 A. trichopoda AmTr_v1.0_scaffold00026:25479-27795 (+) noncoding (-1.04681)- 78 8.884 Confident lncRNA
CNT0023397 A. trichopoda AmTr_v1.0_scaffold00026:309614-310121 (+) noncoding (-0.850974)- 81 1.825 Confident lncRNA
CNT0023396 A. trichopoda AmTr_v1.0_scaffold00026:3265514-3268225 (+) coding (0.405606)0.00000000000002 (sp|Q9C5J7|PFKA7_ARATH) 87 4.132 Confident lncRNA
CNT0023395 A. trichopoda AmTr_v1.0_scaffold00026:3269135-3270484 (+) noncoding (-0.631177)2e-34 (sp|Q94AA4|PFKA3_ARATH) 106 1.115 Low-confidence lncRNA
CNT0023394 A. trichopoda AmTr_v1.0_scaffold00026:2494880-2508423 (+) noncoding (-0.171889)1e-63 (sp|O65220|CPY28_ARATH) 267 9.598 Low-confidence lncRNA
CNT0023393 A. trichopoda AmTr_v1.0_scaffold00026:3404310-3406786 (-) noncoding (-1.06175)- 87 3.149 Confident lncRNA
CNT0023392 A. trichopoda AmTr_v1.0_scaffold00026:2963275-2966557 (-) noncoding (-0.296096)- 227 10.673 Confident lncRNA
CNT0023391 A. trichopoda AmTr_v1.0_scaffold00026:2963275-2966557 (-) noncoding (-0.309006)- 207 11.03 Confident lncRNA
CNT0023390 A. trichopoda AmTr_v1.0_scaffold00026:1433982-1438660 (-) noncoding (-1.12402)1e-19 (sp|Q5JKB0|MCM4_ORYSJ) 84 13.127 Confident lncRNA
CNT0023389 A. trichopoda AmTr_v1.0_scaffold00026:1433982-1438660 (-) noncoding (-0.927644)7e-20 (sp|Q5JKB0|MCM4_ORYSJ) 98 11.445 Confident lncRNA
CNT0023388 A. trichopoda AmTr_v1.0_scaffold00026:1739646-1742870 (+) noncoding (-1.05381)- 51 8.79 Confident lncRNA
CNT0023387 A. trichopoda AmTr_v1.0_scaffold00026:1739646-1742870 (+) noncoding (-1.02723)- 51 10.737 Confident lncRNA
CNT0023386 A. trichopoda AmTr_v1.0_scaffold00026:1808499-1811166 (+) coding (0.385895)- 221 4.745 Confident lncRNA
CNT0023385 A. trichopoda AmTr_v1.0_scaffold00026:28885-29533 (-) noncoding (-1.12365)- 58 6.79 Confident lncRNA
CNT0023384 A. trichopoda AmTr_v1.0_scaffold00026:150653-151243 (-) coding (0.543788)2e-17 (sp|Q9SXS2|SUT33_ARATH) 53 3.053 Confident lncRNA
CNT0023383 A. trichopoda AmTr_v1.0_scaffold00025:2517992-2524037 (+) coding (0.0951602)- 185 54.131 Confident lncRNA
CNT0023382 A. trichopoda AmTr_v1.0_scaffold00025:2628447-2643103 (+) noncoding (-0.573629)8e-23 (sp|A5V9P7|RS16_SPHWW) 132 90.803 Low-confidence lncRNA
CNT0023381 A. trichopoda AmTr_v1.0_scaffold00025:2630369-2643103 (+) noncoding (-0.556755)6e-23 (sp|A5V9P7|RS16_SPHWW) 132 57.861 Low-confidence lncRNA
CNT0023380 A. trichopoda AmTr_v1.0_scaffold00025:3957161-3970576 (+) coding (0.896817)- 348 27.877 Confident lncRNA
CNT0023379 A. trichopoda AmTr_v1.0_scaffold00025:3957161-3970576 (+) coding (0.732876)- 308 28.963 Confident lncRNA
CNT0023378 A. trichopoda AmTr_v1.0_scaffold00025:3957161-3970576 (+) coding (1.21494)- 381 30.9 Confident lncRNA
CNT0023377 A. trichopoda AmTr_v1.0_scaffold00025:3975896-3984264 (+) coding (0.72886)1e-16 (sp|B4SA76|TRUA_PELPB) 438 8.129 Confident lncRNA
CNT0023376 A. trichopoda AmTr_v1.0_scaffold00025:144451-153908 (-) noncoding (-0.521064)1e-79 (sp|Q9LIH7|ZDHC7_ARATH) 342 3.885 Low-confidence lncRNA
CNT0023375 A. trichopoda AmTr_v1.0_scaffold00025:1837093-1843782 (-) coding (1.29663)- 502 5.755 Confident lncRNA
CNT0023374 A. trichopoda AmTr_v1.0_scaffold00025:4122732-4124204 (+) noncoding (-1.21806)- 46 5.543 Confident lncRNA
CNT0023373 A. trichopoda AmTr_v1.0_scaffold00025:1635986-1636398 (+) noncoding (-0.891693)- 42 0 Confident lncRNA