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TCONS_00218593 (lncRNA) and ENST00000232564: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00218593 vs ENST00000232564)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000232564 guanine nucleotide binding protein (G protein), beta polypeptide 4 protein coding TCONS_00218593 604 302 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00218593 (lncRNA)Expression for ENST00000232564



Is lncRNA (TCONS_00218593) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000237499 up 0.000000133179527966 2.00233 YES YES


Is the interacting transcript (ENST00000232564) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000114450 down 1.57961684493e-26 4.59921 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00218593 (lncRNA)All interactions for ENST00000232564