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TCONS_00222844 (lncRNA) and ENST00000262031: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00222844 vs ENST00000262031)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding TCONS_00222844 768 525 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00222844 (lncRNA)Expression for ENST00000262031



Is lncRNA (TCONS_00222844) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000157259 up 0.00527665931588 1.22255 . .


Is the interacting transcript (ENST00000262031) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000076067 down 4.18319040162e-20 2.46524 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00222844 (lncRNA)All interactions for ENST00000262031