« Back to search



TCONS_00189255 (lncRNA) and ENST00000296498: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00189255 vs ENST00000296498)

Number of records: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000296498 protease, serine, 12 (neurotrypsin, motopsin) protein coding TCONS_00189255 6126 2208 CDS_UTR Trans
ENST00000296498 protease, serine, 12 (neurotrypsin, motopsin) protein coding TCONS_00189255 2194 781 CDS Cis
ENST00000296498 protease, serine, 12 (neurotrypsin, motopsin) protein coding TCONS_00189255 6786 2456 CDS_UTR Cis

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00189255 (lncRNA)Expression for ENST00000296498



Is lncRNA (TCONS_00189255) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000269893 down 0.000000000172463310118 1.70359 YES YES


Is the interacting transcript (ENST00000296498) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000164099 - >0.05 - - -

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00189255 (lncRNA)All interactions for ENST00000296498