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TCONS_00222847 (lncRNA) and ENST00000301178: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00222847 vs ENST00000301178)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000301178 AXL receptor tyrosine kinase protein coding TCONS_00222847 611 296 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00222847 (lncRNA)Expression for ENST00000301178



Is lncRNA (TCONS_00222847) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000157259 up 0.00527665931588 1.22255 . .


Is the interacting transcript (ENST00000301178) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000167601 down 1.37147485047e-24 2.68638 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00222847 (lncRNA)All interactions for ENST00000301178