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ENST00000554457 (lncRNA) and ENST00000302000: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000554457 vs ENST00000302000)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000302000 pygopus family PHD finger 1 protein coding ENST00000554457 604 275 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000554457 (lncRNA)Expression for ENST00000302000



Is lncRNA (ENST00000554457) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000100902 - >0.05 - - -


Is the interacting transcript (ENST00000302000) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000171016 down 2.02250801264e-18 3.48601 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000554457 (lncRNA)All interactions for ENST00000302000