« Back to search



TCONS_00038086 (lncRNA) and ENST00000307792: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00038086 vs ENST00000307792)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000307792 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein coding TCONS_00038086 608 294 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00038086 (lncRNA)Expression for ENST00000307792



Is lncRNA (TCONS_00038086) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000246067 up 0.000408153836189 1.50799 YES YES


Is the interacting transcript (ENST00000307792) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000170381 - >0.05 - - -

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00038086 (lncRNA)All interactions for ENST00000307792