TCONS_00041427 (lncRNA) and ENST00000336505: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00041427 vs ENST00000336505)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336505 suppressor of cancer cell invasion protein coding TCONS_00041427 606 299 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00041427 (lncRNA)Expression for ENST00000336505



Is lncRNA (TCONS_00041427) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000166444 down 0.000000596588347263 1.88925 YES YES


Is the interacting transcript (ENST00000336505) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000173611 up 0.000000473261116641 1.62544 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52