TCONS_00177955 (lncRNA) and ENST00000336824: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00177955 vs ENST00000336824)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336824 fibronectin type III domain containing 3B protein coding TCONS_00177955 623 298 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00177955 (lncRNA)Expression for ENST00000336824



Is lncRNA (TCONS_00177955) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000196220 up 0.00312181997142 1.54108 . YES


Is the interacting transcript (ENST00000336824) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000075420 down 2.50184567904e-19 2.13856 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52