« Back to search



TCONS_00019078 (lncRNA) and ENST00000367590: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00019078 vs ENST00000367590)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00019078 583 305 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00019078 (lncRNA)Expression for ENST00000367590



Is lncRNA (TCONS_00019078) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000143552 - >0.05 - - -


Is the interacting transcript (ENST00000367590) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000143324 down 0.000000893072945437 1.56117 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00019078 (lncRNA)All interactions for ENST00000367590