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TCONS_00143494 (lncRNA) and ENST00000397755: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00143494 vs ENST00000397755)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00143494 558 293 noncoding Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00143494 550 287 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00143494 (lncRNA)Expression for ENST00000397755



Is lncRNA (TCONS_00143494) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000233654 up 1.29916155407e-19 2.94406 YES YES


Is the interacting transcript (ENST00000397755) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000214189 down 0.000289439671478 1.52202 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00143494 (lncRNA)All interactions for ENST00000397755