« Back to search



TCONS_00026046 (lncRNA) and ENST00000405000: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00026046 vs ENST00000405000)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000405000 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 retained intron TCONS_00026046 704 312 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00026046 (lncRNA)Expression for ENST00000405000



Is lncRNA (TCONS_00026046) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000271880 up 0.0000639714722664 1.63748 YES YES


Is the interacting transcript (ENST00000405000) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000152527 down 0.0000000000000661676227068 2.30416 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00026046 (lncRNA)All interactions for ENST00000405000