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TCONS_00108795 (lncRNA) and ENST00000409359: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00108795 vs ENST00000409359)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding TCONS_00108795 653 292 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00108795 (lncRNA)Expression for ENST00000409359



Is lncRNA (TCONS_00108795) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000262966 - >0.05 - - -


Is the interacting transcript (ENST00000409359) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000136002 up 0.000000127134168556 1.79317 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00108795 (lncRNA)All interactions for ENST00000409359