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TCONS_00175016 (lncRNA) and ENST00000429747: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00175016 vs ENST00000429747)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000429747 copine IV protein coding TCONS_00175016 1570 572 CDS Cis
ENST00000429747 copine IV protein coding TCONS_00175016 1612 575 CDS Cis

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00175016 (lncRNA)Expression for ENST00000429747



Is lncRNA (TCONS_00175016) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000196353 down 0.00000000000000289147967844 4.07032 YES YES


Is the interacting transcript (ENST00000429747) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000196353 down 0.00000000000000289147967844 4.07032 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00175016 (lncRNA)All interactions for ENST00000429747