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TCONS_00017752 (lncRNA) and ENST00000439138: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00017752 vs ENST00000439138)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding TCONS_00017752 542 269 UTR5 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00017752 598 265 UTR5 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00017752 (lncRNA)Expression for ENST00000439138



Is lncRNA (TCONS_00017752) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000175984 down 0.00150340934839 1.50463 . YES


Is the interacting transcript (ENST00000439138) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000006042 down 2.67865442397e-20 3.28883 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00017752 (lncRNA)All interactions for ENST00000439138