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TCONS_00143590 (lncRNA) and ENST00000448612: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00143590 vs ENST00000448612)

Number of records: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448612 WD repeat domain 27 protein coding TCONS_00143590 673 312 CDS Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00143590 650 314 CDS Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00143590 513 299 CDS Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00143590 (lncRNA)Expression for ENST00000448612



Is lncRNA (TCONS_00143590) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000173559 down 0.00000000118724437164 2.91388 . YES


Is the interacting transcript (ENST00000448612) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000184465 up 0.00000000341486315973 1.74061 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00143590 (lncRNA)All interactions for ENST00000448612