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ENST00000466893 (lncRNA) and ENST00000474889: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000466893 vs ENST00000474889)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000474889 protein tyrosine phosphatase, receptor type, G protein coding ENST00000466893 797 287 CDS Cis

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000466893 (lncRNA)Expression for ENST00000474889



Is lncRNA (ENST00000466893) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000241472 - >0.05 - - -


Is the interacting transcript (ENST00000474889) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000144724 down 7.35981494373e-42 5.90849 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000466893 (lncRNA)All interactions for ENST00000474889