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TCONS_00248628 (lncRNA) and ENST00000479069: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00248628 vs ENST00000479069)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000479069 bone morphogenetic protein receptor, type II (serine/threonine kinase) processed transcript TCONS_00248628 693 295 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00248628 (lncRNA)Expression for ENST00000479069



Is lncRNA (TCONS_00248628) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000237385 - >0.05 - - -


Is the interacting transcript (ENST00000479069) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000204217 down 0.0000000000294713335199 1.77536 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00248628 (lncRNA)All interactions for ENST00000479069