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ENST00000509318 (lncRNA) and ENST00000489959: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000509318 vs ENST00000489959)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000489959 carcinoembryonic antigen-related cell adhesion molecule pseudogene 10 processed transcript ENST00000509318 706 348 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000509318 (lncRNA)Expression for ENST00000489959



Is lncRNA (ENST00000509318) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000047621 down 0.00000000206825444314 1.47075 YES YES


Is the interacting transcript (ENST00000489959) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000241104 - >0.05 - - -

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000509318 (lncRNA)All interactions for ENST00000489959