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ENST00000548578 (lncRNA) and ENST00000494102: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000548578 vs ENST00000494102)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494102 suppressor of cancer cell invasion nonsense mediated decay ENST00000548578 532 270 CDS_UTR Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000548578 (lncRNA)Expression for ENST00000494102



Is lncRNA (ENST00000548578) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000076108 - >0.05 - - -


Is the interacting transcript (ENST00000494102) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000173611 up 0.000000473261116641 1.62544 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000548578 (lncRNA)All interactions for ENST00000494102