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TCONS_00066308 (lncRNA) and ENST00000523000: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00066308 vs ENST00000523000)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000523000 ankyrin repeat domain 46 protein coding TCONS_00066308 532 348 UTR5 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00066308 (lncRNA)Expression for ENST00000523000



Is lncRNA (TCONS_00066308) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000168852 up 0.00114309455484 1.62964 YES YES


Is the interacting transcript (ENST00000523000) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000186106 up 5.77250818635e-18 2.26276 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00066308 (lncRNA)All interactions for ENST00000523000