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ENST00000415237 (lncRNA) and ENST00000542869: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000415237 vs ENST00000542869)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000542869 protein tyrosine kinase 6 protein coding ENST00000415237 643 308 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000415237 (lncRNA)Expression for ENST00000542869



Is lncRNA (ENST00000415237) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000203446 down 0.0000970664204641 2.08021 . YES


Is the interacting transcript (ENST00000542869) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000101213 up 0.0000292407951094 1.56294 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000415237 (lncRNA)All interactions for ENST00000542869