ENST00000588137 (lncRNA) and ENST00000553127: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000588137 vs ENST00000553127)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000588137 640 294 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000588137 (lncRNA)Expression for ENST00000553127



Is lncRNA (ENST00000588137) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000099337 down 0.00000134756515281 1.64765 YES YES


Is the interacting transcript (ENST00000553127) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000123352 down 0.000000000000271671408121 2.02298 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52