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ENST00000604716 (lncRNA) and ENST00000553127: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000604716 vs ENST00000553127)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000604716 603 285 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000604716 665 295 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000604716 (lncRNA)Expression for ENST00000553127



Is lncRNA (ENST00000604716) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000270605 up 0.00054203496918 1.56368 . YES


Is the interacting transcript (ENST00000553127) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000123352 down 0.000000000000271671408121 2.02298 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000604716 (lncRNA)All interactions for ENST00000553127