« Back to search



TCONS_00175016 (lncRNA) and ENST00000553936: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00175016 vs ENST00000553936)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000553936 gephyrin nonsense mediated decay TCONS_00175016 603 313 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00175016 605 291 CDS_UTR Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00175016 (lncRNA)Expression for ENST00000553936



Is lncRNA (TCONS_00175016) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000196353 down 0.00000000000000289147967844 4.07032 YES YES


Is the interacting transcript (ENST00000553936) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000171723 up 0.0000498514642496 1.5421 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00175016 (lncRNA)All interactions for ENST00000553936