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TCONS_00244934 (lncRNA) and ENST00000556539: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00244934 vs ENST00000556539)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript TCONS_00244934 734 296 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00244934 (lncRNA)Expression for ENST00000556539



Is lncRNA (TCONS_00244934) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000011454 up 0.00136950550014 1.23857 . .


Is the interacting transcript (ENST00000556539) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000170581 down 0.000000000000002176050895 2.45477 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00244934 (lncRNA)All interactions for ENST00000556539