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ENST00000489790 (lncRNA) and ENST00000568559: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000489790 vs ENST00000568559)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000489790 638 278 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000489790 (lncRNA)Expression for ENST00000568559



Is lncRNA (ENST00000489790) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000130349 up 0.000445907184183 1.29739 YES .


Is the interacting transcript (ENST00000568559) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000166822 up 0.00000000435117493855 1.5115 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000489790 (lncRNA)All interactions for ENST00000568559