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ENST00000491790 (lncRNA) and ENST00000572705: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000491790 vs ENST00000572705)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000491790 521 281 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000491790 641 298 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000491790 (lncRNA)Expression for ENST00000572705



Is lncRNA (ENST00000491790) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000143624 up 0.00123717123973 1.21085 . .


Is the interacting transcript (ENST00000572705) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000262304 up 0.000000000787963974579 1.77744 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000491790 (lncRNA)All interactions for ENST00000572705