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TCONS_00208218 (lncRNA) and ENST00000572705: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00208218 vs ENST00000572705)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00208218 520 295 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00208218 647 286 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00208218 (lncRNA)Expression for ENST00000572705



Is lncRNA (TCONS_00208218) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000168566 - >0.05 - - -


Is the interacting transcript (ENST00000572705) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000262304 up 0.000000000787963974579 1.77744 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00208218 (lncRNA)All interactions for ENST00000572705