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ENST00000477919 (lncRNA) and ENST00000589285: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000477919 vs ENST00000589285)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000589285 zinc finger protein 540 retained intron ENST00000477919 624 303 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000477919 (lncRNA)Expression for ENST00000589285



Is lncRNA (ENST00000477919) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000144401 up 0.000503109594916 1.25997 YES YES


Is the interacting transcript (ENST00000589285) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000171817 up 0.00000000000202808636504 2.39606 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000477919 (lncRNA)All interactions for ENST00000589285