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TCONS_00223652 (lncRNA) and ENST00000593250: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00223652 vs ENST00000593250)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00223652 571 297 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00223652 600 262 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00223652 (lncRNA)Expression for ENST00000593250



Is lncRNA (TCONS_00223652) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000272949 - >0.05 - - -


Is the interacting transcript (ENST00000593250) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000101624 up 1.18830272944e-27 2.23651 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00223652 (lncRNA)All interactions for ENST00000593250