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ENST00000489678 (lncRNA) and ENST00000598368: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000489678 vs ENST00000598368)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000598368 RPARP antisense RNA 1 retained intron ENST00000489678 610 303 noncoding Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000489678 (lncRNA)Expression for ENST00000598368



Is lncRNA (ENST00000489678) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000119688 - >0.05 - - -


Is the interacting transcript (ENST00000598368) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000269609 up 0.00000000000132097600744 1.83708 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000489678 (lncRNA)All interactions for ENST00000598368