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ENST00000548468 (lncRNA) and ENST00000604000: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000548468 vs ENST00000604000)

Number of records: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000548468 605 277 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000548468 741 295 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000548468 (lncRNA)Expression for ENST00000604000



Is lncRNA (ENST00000548468) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000272368 - >0.05 - - -


Is the interacting transcript (ENST00000604000) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000271601 down 2.73484022137e-20 2.70477 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for ENST00000548468 (lncRNA)All interactions for ENST00000604000