« Back to search



TCONS_00060055 (lncRNA) and ENST00000620340: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00060055 vs ENST00000620340)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620340 ribosomal protein S6 kinase, 90kDa, polypeptide 6 protein coding TCONS_00060055 618 298 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00060055 (lncRNA)Expression for ENST00000620340



Is lncRNA (TCONS_00060055) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000198673 - >0.05 - - -


Is the interacting transcript (ENST00000620340) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000072133 up 0.0000000295979040662 2.25365 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00060055 (lncRNA)All interactions for ENST00000620340