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TCONS_00132105 (lncRNA) and TCONS_00123899: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00132105 vs TCONS_00123899)

Number of records: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1038 1124 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1472 1702 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 882 984 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 957 985 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1268 1120 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1358 1047 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1180 1067 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1270 926 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1161 946 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1091 1008 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1098 915 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1060 992 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 1006 913 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 903 862 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 805 778 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 591 699 UTR3 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00132105 582 610 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00132105 (lncRNA)Expression for TCONS_00123899



Is lncRNA (TCONS_00132105) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000267565 up 0.00377723572661 1.48416 . YES


Is the interacting transcript (TCONS_00123899) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000205246 up 0.000000000000043389280637 2.71764 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00132105 (lncRNA)All interactions for TCONS_00123899