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TCONS_00149038 (lncRNA) and TCONS_00148387: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00149038 vs TCONS_00148387)

Number of records: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148387 reticulon 4 novel protein coding TCONS_00149038 674 297 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding TCONS_00149038 711 293 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding TCONS_00149038 623 301 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding TCONS_00149038 621 288 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00149038 (lncRNA)Expression for TCONS_00148387



Is lncRNA (TCONS_00149038) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000116001 - >0.05 - - -


Is the interacting transcript (TCONS_00148387) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000115310 down 0.00000000000172459686263 1.80304 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00149038 (lncRNA)All interactions for TCONS_00148387