ENST00000542524 (lncRNA) and TCONS_00189916: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (ENST00000542524 vs TCONS_00189916)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000542524 520 299 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for ENST00000542524 (lncRNA)Expression for TCONS_00189916



Is lncRNA (ENST00000542524) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000076555 up 0.000000000507374952151 1.70628 YES YES


Is the interacting transcript (TCONS_00189916) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000170390 up 0.0000000000113969228629 3.79885 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52