Detailed information on ENST00000272402

lncRNA-RNA interactions

Number of interactions: 79

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000312828 ring finger protein 152 protein coding ENST00000272402 624 278 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000272402 700 293 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000272402 530 281 noncoding Trans
ENST00000450928 antisense antisense ENST00000272402 545 296 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000272402 541 294 CDS_UTR Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000272402 695 290 noncoding Trans
ENST00000529743 lincRNA lincRNA ENST00000272402 642 294 noncoding Trans
ENST00000532572 protease, serine, 23 retained intron ENST00000272402 600 285 noncoding Trans
ENST00000548404 transcribed_unprocessed_pseudogene processed transcript ENST00000272402 540 268 noncoding Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000272402 729 290 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000272402 680 294 UTR3 Trans
ENST00000590442 zinc finger protein 532 retained intron ENST00000272402 665 290 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000272402 690 292 UTR3 Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000272402 614 288 noncoding Trans
TCONS_00006772 lincRNA novel protein coding ENST00000272402 610 296 UTR3 Trans
TCONS_00013935 platelet-activating factor receptor novel protein coding ENST00000272402 651 292 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000272402 627 283 UTR3 Trans
TCONS_00032153 long intergenic non-protein coding RNA 959 novel noncoding ENST00000272402 623 273 noncoding Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000272402 629 295 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000272402 629 295 UTR3 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000272402 729 290 UTR3 Trans
TCONS_00061180 golgin A2 pseudogene 5 novel protein coding ENST00000272402 540 268 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000272402 670 283 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000272402 670 283 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000272402 618 261 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000272402 623 293 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000272402 626 289 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000272402 700 293 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000272402 700 293 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000272402 700 293 UTR3 Trans
TCONS_00099311 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000272402 650 275 UTR5 Trans
TCONS_00099312 solute carrier family 7 (amino acid transporter light chain, L system), member 5 novel protein coding ENST00000272402 650 275 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000272402 654 281 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000272402 680 294 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000272402 694 279 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000272402 694 279 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000272402 654 281 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000272402 660 288 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000272402 636 289 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000272402 711 296 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000272402 624 278 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000272402 675 292 noncoding Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000272402 666 290 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000272402 677 292 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000272402 646 289 UTR5 Trans
TCONS_00142538 antisense novel protein coding ENST00000272402 652 287 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000272402 618 295 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000272402 658 281 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000272402 629 296 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000272402 629 296 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000272402 606 293 UTR5 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000272402 601 289 UTR5 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding ENST00000272402 641 288 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000272402 618 287 UTR5 Trans
TCONS_00165713 LIM domain kinase 2 novel protein coding ENST00000272402 619 282 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000272402 642 278 noncoding Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000272402 607 287 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000272402 667 292 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000272402 604 292 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000272402 631 263 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000272402 617 287 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000272402 636 288 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000272402 610 293 UTR3 Trans
TCONS_00210636 polymerase (DNA directed), eta novel noncoding ENST00000272402 617 276 noncoding Trans
TCONS_00211226 antisense novel protein coding ENST00000272402 613 262 UTR5 Trans
TCONS_00216783 KH homology domain containing 1 novel noncoding ENST00000272402 656 284 noncoding Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000272402 631 287 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000272402 654 292 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000272402 654 292 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000272402 654 292 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000272402 625 292 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000272402 671 296 UTR3 Trans

Sequence

>TCONS_00240688 (3587 nt)
TCTGTCGGCCGCGGAAGCCTGGAGTGGGCGGTACGCAGACGCGCGCGGTGAGACCCGCTGTCTGCTCAGCGGACTCTGCCCGCCCCCACCTCCCCCTGCG
TCGGGCCGACATGAAGGACTCGCTGGTGCTGCTGGGCCGTGTCCCGGCGCACCCGGACTCCCGCTGCTGGTTCCTGGCCTGGAACCCCGCGGGGACCCTG
CTGGCCTCGTGCGGCGGCGACCGGAGAATCCGCATCTGGGGCACGGAGGTGTGTAACCACTCTCGAGGGCCATGAAAATGAGGTCAAGTCAGTGGCTTGG
GCCCCATCTGGCAACCTCCTGGCCACTTGCAGCCGAGATAAGAGCGTTTGGGTCTGGGAAGTTGATGAAGAGGATGAGTATGAATGTGTCAGTGTTCTCA
ACTCCCACACACAGGATGTCAAGCATGTGGTTTGGCACCCAAGTCAGGAGCTCTTAGCTTCTGCCAGCTATGATGACACAGTGAAGCTGTACCGGGAGGA
AGAGGATGACTGGGTATGCTGTGCCACCCTTGAGGGCCATGAATCCACTGTGTGGAGCTTGGCCTTTGACCCGAGTGGCCAGCGCCTGGCGTCTTGTAGT
GATGACCGTACTGTGCGTATCTGGCGTCAGTATCTACCAGGCAATGAACAAGGTGAGGTCCATTAGTAGAGCTAAAGAAGACCCATCTCTCAAGGGGTTC
ACAGTCTGCTAAGACACGTACATGAGTCAGAGCAAATGGGGGTAAAAGGTAAGATGTGCTACAAGAGGGCTCTGGATAGAGTGCTGGAAGAATCAGGAAA
GTTTTGTAGAATGGGTTGTTTCATCTGAATTTAAAAGGGTATGTAGGATTTTAACATGAGAATTTCACGTGAGAATTCAAGTGAAAACTCAACAGTGTGA
GTAAAGATAACAATGGCGGGAATGCTTAGACTGAGGGGTGGTAATGCATTTAAATGGGGCATAGGACGTCTGGGGTTTGGAGAGGAATAAAGTGGGTTGG
GTCGGCTGGTGGGTGGCCTTCACAGGCACGCAAAGTAGTTACATACAGTCTGCAACAGAACAGGGATGTTTCCTCGGAATTCTGCTTGAGAAACGCCAGT
CTGGCTATAGTGTGTAAGGCAGATAAGCAGGGATGGGGACACGAACGGAGACACAGACTCATAATCAGTTGAAGATGAGGGTGAGGGAAGGTAAGTTAGG
TTCTCCTTTGAGGTGCCCAGGACATAGGAACGTTTAAGGGCAAGAGAAGTCTGTCTTGCAGGGGTGGCATGCAGCGGCTCTGACCCCAGTTGGAAATGTA
TCTGTACTTTGTCCGGCTTCCACTCAAGGACCATTTATGACATTGCTTGGTGTCAGCTGACAGGGGCTCTGGCCACAGCTTGTGGGGATGACGCGATCCG
CGTGTTTCAGGAGGATCCCAACTCGGATCCACAGCAGCCCACCTTCTCCCTGACAGCCCACTTGCATCAGGCCCATTCCCAGGATGTCAACTGTGTGGCC
TGGAACCCCAAGGAGCCAGGGCTACTGGCCTCCTGCAGTGATGATGGGGAGGTGGCCTTCTGGAAGTATCAGCGGCCTGAAGGCCTCTGAGCTACCTCGA
CTTTGGACAGAGTAATGACTCCCCAGAAAACGTCATATAAGACTTTACCAGCCCCTGAGAGGACCAGGAGGAGCATCCTTGACCTTCATTTAACTTGGCT
CACTTCTCTTCAGACTTGGGTAGAAGTGCAGAGCCACAGAATTGCTTTCCTTCCCCGCCTTTGACATGAGGCCTTCAGTAAAGAGCTACAGAACATGAGT
ACATTGTTATACCACAGATTTTTCTTGCATTAGGGCACAGTGTTAAATTTTTTGGAGGTAAATATACTATTTATAATCACTATATATAGTAGGAGGGGGT
ATGTGTCTCAGGCTTTTCTGAAGTTGCAAGACTTAAAGAAATAATCCATCTGCATCCCAAGTCCTATTTTATAAGGATATTCATAAAAATTCCATGGTGA
ATCCTTGTCTGAAATAGGTCCTCCCTTCCCAGTTTCTGTGTAAGTCTTTGCATTTAAGACATCCAATCAATAATGAAGGAAATTTTTTTCTGAATGTAGG
TTTGAGTGAGGGGCACCTCTGCTTTCCCTTAGCAACCCTCATATACCTCCCTGCACCGTTACGCTGTGATGGCAACTGGGGATAGAAAAAAAATGGGGAA
AGACAGGAATCCTAAAAGGGAGAGTTATTACTGGCCACAAGCCCTGTATTCTCAACAGGGATGCAAATTGGTTCTTCAGTAAGGATAAAAAAAAATCACA
AGCAGTTGTTTGTGGCCCTCCTAAGGCCCACAGCACATATAGTGTGTCTGTGATATTCCATTTTCATGGCAGGGAGTGATCAGGAAGAAGGCTTCCTAGG
GGACTGGCGATTTAAACCAGTTGAGAAACACTGCCATCAGCAGGCAGTTTCAGACTCACTCAAGTTGTCTCTTGACAGTCACTTCTAAATGGGTTCTAAT
GTGACAATGGCCTCCAAAACTACAGCCTTCCCTGAAGTTTAAGCTGTGACCTTAGATTTTAGAAGGACAGTGGGGCTGTACCTAGAATAGTGGTTCTCGA
AGAATGCGGCCTGCAGATCCTGGGAGTCCCAAGACCCTTTCAGGGAGGATCTGTGAGGTCAACTGTTGGCACTGTGGCATGAATCAAGGTGGTGGCAGCA
AACTTCTAGTAGTTTTGATATGTCCTTGATAGAACAAATAGCAATGGTTAACTATTAAATGTTGACCTAGCCAGCGCAGTGGCTCATGCCTGTAATCCCA
GCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGGCCAGCCTGACCAACATGGAGAAACCCCGTCTCTTCTAAAAATACAAAAT
TAGCTGGGCATGGTGGTGCATGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAAGAGAATCGCTTGAATCCGGTAGGTGGAGGTTGCAGTGAGCCGAG
ATCATACCATTGCACTCCAGCCCAGGCAACAAGAGTGAAACCCTGTCTCAAAAAGAAAAAAAAAGTTGACCTTGAGAATTTATAATATTCTGAGAAAACT
GGAAGCATGCATAAAGCCCCTCTGCTGTGCACTGAAGTATGGGTGCCTTGAGGAAAAGCAGTTACACAGTTGAGTTGCAAGCTGAATTGGCTGTGTTCAA
GGCATGCCCTTTAGAATTGAAAGAACTAGCAGATTACGGTATTTAGACTTGAATATTTGGCTGATATTTTCTGGAAATTAATGGAATGAGCCTCTCACCT
CAAGGGAAACAACTGATAGTGTTGCCAGTGATAAAGCTTTCAAGCAAAAATTGGAATTTCCGAAAATCTGTACTCCACCATGAGCTTTATTGTTGGGGAT
ATTAACAAATGTGATTTGTATAATGAAATGCATTTCATTTGGAAGAATTCAATGAACCATTTTTCCAAGTGACCAGTACGTGATGTTACAAAATCATGCA
TGGCTCAAAGATTGATTCAAAAGTGTAAGACAGGCCAGTGGATTTTAATGTATTAACAATATAAGAGTGCATTAAGTTTTCGGAGTCT

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.