Detailed information on ENST00000366105

lncRNA-RNA interactions

Number of interactions: 58

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000366105 642 285 UTR3 Trans
ENST00000405000 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 retained intron ENST00000366105 600 286 noncoding Trans
ENST00000424496 sense_intronic sense intronic ENST00000366105 627 279 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000366105 576 279 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000366105 626 289 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000366105 629 285 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000366105 534 252 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000366105 534 252 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000366105 620 283 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000366105 612 283 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000366105 672 283 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000366105 641 285 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000366105 642 285 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000366105 642 285 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000366105 645 285 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000366105 634 268 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000366105 634 268 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000366105 630 266 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000366105 624 284 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000366105 624 284 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000366105 635 278 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000366105 625 295 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000366105 625 295 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000366105 611 281 noncoding Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000366105 682 275 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000366105 617 283 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000366105 619 285 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000366105 540 286 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000366105 621 283 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000366105 603 285 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000366105 610 283 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000366105 617 279 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000366105 644 283 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000366105 644 283 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000366105 644 283 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000366105 635 283 UTR5 Trans
TCONS_00182611 processed_transcript novel protein coding ENST00000366105 629 285 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding ENST00000366105 629 285 UTR3 Trans
TCONS_00182614 processed_transcript novel protein coding ENST00000366105 629 285 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000366105 674 283 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000366105 649 284 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000366105 649 284 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000366105 635 283 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000366105 635 283 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000366105 640 283 UTR5 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000366105 600 283 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000366105 600 285 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000366105 665 283 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000366105 628 286 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000366105 602 275 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000366105 602 275 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000366105 625 275 UTR3 Trans

Sequence

>TCONS_00253752 (376 nt)
TCAACAACTAATCCACAAAGCAGATAACTGAAATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGCGCAATCTCGGCTCACTACAAACTCCGTC
TCCCGGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGACTACAGACGCCCCCCACCATGCCCGGCTATTTTTTTTTTATTTTTTGTAGAG
ACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTAACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACAC
CGCGTCTGGCTAATTATGGTTATTCTTATCATCATCATTTGAAAGAACAGTTGTAAATAAAGAGAGTAAATAAATTA

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.