| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000448612 | WD repeat domain 27 | protein coding | ENST00000366109 | 506 | 280 | CDS | Trans | |
| ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | ENST00000366109 | 531 | 270 | CDS_UTR | Trans | |
| ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | ENST00000366109 | 592 | 274 | UTR3 | Trans | |
| TCONS_00065093 | UBA domain containing 2 | novel protein coding | ENST00000366109 | 615 | 274 | UTR5 | Trans | |
| TCONS_00065094 | UBA domain containing 2 | novel protein coding | ENST00000366109 | 615 | 274 | UTR5 | Trans | |
| TCONS_00065103 | UBA domain containing 2 | novel protein coding | ENST00000366109 | 615 | 274 | UTR5 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000366109 | 554 | 273 | UTR5 | Trans | |
| TCONS_00148698 | WD repeat containing planar cell polarity effector | novel noncoding | ENST00000366109 | 604 | 271 | noncoding | Trans | |
| TCONS_00148704 | WD repeat containing planar cell polarity effector | novel protein coding | ENST00000366109 | 604 | 271 | UTR3 | Trans | |
| TCONS_00148705 | WD repeat containing planar cell polarity effector | novel protein coding | ENST00000366109 | 604 | 271 | UTR3 | Trans | |
| TCONS_00185321 | transferrin receptor | novel protein coding | ENST00000366109 | 603 | 275 | UTR5 | Trans | |
| TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000366109 | 604 | 277 | UTR5 | Trans |
>TCONS_00252827 (577 nt)
GCATCTGAGAAGCTCTGGAAAAAACCTCTCAGGAAAACAACGACTTCAGCAGGACCCACTAGCCAAGGAAAGGGGATAAAATAAATAGCAAAGGGAAGGA
AAAACACGCACCTCTGGGATGCTGCAGGTCCTGTTGCAGCCGCCGCCATCCCTCGAAGCCACCGTTGCTTCTGCCAGAGCTGCTACTAGCGCGCTTATCA
GCTCCGCCACCGCCCAAGGGGGAAACTTCTGCAGAAACCCCAACCGAGCTTCCGTCTAACACAAGCTCCAGGCCGGGCGCCGTGGCTCACGCCTGTAATC
CCAGCACTTTGGGAGTCCGAGACGGGTGGATCACGAAGTCAGGAGTTCAAGACCAGCCTCGCCAAGATGCTGAAACCCCGTCTACGAAAAATACAAAAAT
TAGCCGGGCGTGATGGTGGGCGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAG
ATCGCGCCACTGCACCACAGCCTGGGCGACAGAGCAAGACTCCTTAATAAATAAATAAATAAATAAAAAATAAATAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.