| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000424496 | sense_intronic | sense intronic | ENST00000366253 | 539 | 273 | noncoding | Trans | |
| TCONS_00001821 | low density lipoprotein receptor adaptor protein 1 | novel protein coding | ENST00000366253 | 636 | 278 | UTR5 | Trans | |
| TCONS_00001823 | low density lipoprotein receptor adaptor protein 1 | novel protein coding | ENST00000366253 | 636 | 278 | UTR5 | Trans | |
| TCONS_00023682 | pre-mRNA processing factor 18 | novel protein coding | ENST00000366253 | 608 | 281 | UTR3 | Trans | |
| TCONS_00023685 | pre-mRNA processing factor 18 | novel protein coding | ENST00000366253 | 608 | 281 | UTR3 | Trans | |
| TCONS_00023687 | pre-mRNA processing factor 18 | novel protein coding | ENST00000366253 | 608 | 281 | UTR3 | Trans | |
| TCONS_00023689 | pre-mRNA processing factor 18 | novel protein coding | ENST00000366253 | 608 | 281 | UTR3 | Trans | |
| TCONS_00028040 | ankyrin repeat domain 16 | novel protein coding | ENST00000366253 | 634 | 279 | UTR3 | Trans | |
| TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000366253 | 602 | 274 | UTR3 | Trans | |
| TCONS_00030592 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000366253 | 602 | 274 | UTR3 | Trans | |
| TCONS_00039782 | GRAM domain containing 1B | novel protein coding | ENST00000366253 | 600 | 279 | UTR5 | Trans | |
| TCONS_00101169 | myosin phosphatase Rho interacting protein | novel protein coding | ENST00000366253 | 519 | 267 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000366253 | 606 | 280 | UTR3 | Trans | |
| TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000366253 | 620 | 265 | UTR3 | Trans | |
| TCONS_00204911 | erythrocyte membrane protein band 4.1 like 4A | novel noncoding | ENST00000366253 | 618 | 266 | noncoding | Trans | |
| TCONS_00204916 | erythrocyte membrane protein band 4.1 like 4A | novel protein coding | ENST00000366253 | 618 | 266 | UTR3 | Trans | |
| TCONS_00247058 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 | novel protein coding | ENST00000366253 | 616 | 274 | UTR3 | Trans |
>TCONS_00247058 (574 nt)
GCATGACCTCTGCTAAAAAAAGTAGGATGAATCCTAAGGAAGTTAATAGCTGAAGGCTGCAGCTACTAGATTCCAGAGAGTGGCCTGGGGCACAAGATAC
TCAACCAGAGCAGACAGTGTCAGCCTCTGTCATGGAAAGCACAGAGCTTCCTATCCTACATGATTGTCTATTGTAATGCCAAATTACAAGCAATGGAGTC
TCACTGTGTTGCCCAGGCTGGAGTGCTGTGGCATGATCTCAGCTCACTGCCATCTCTGCCTCTTGAGTTCAAGCGATTCTCCTGCCTCAGCTTCCCAAGT
AGCTGGGATTACAGGCGCACGCCACCACGCCCCGCTAGTTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTGTAACTCCAG
ACTTCAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCATGCCCAGCCAATTTCCATATATTTTTTATACTGGGATT
TCAGAGAGTAATTTCCTCTTCATGTGTAACCAGTTATGTGAATTAAAACAGATTCAGCCTTCTTTTACGGTTGTG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.