Detailed information on ENST00000366365

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000366365 548 298 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000366365 520 242 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000366365 520 242 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000366365 602 285 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000366365 541 285 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000366365 548 298 UTR3 Trans

Sequence

>TCONS_00153158 (1027 nt)
CACTGACCGGGTGACCAGAGACCCAGAGACCAGACCCCCTCCACGGCGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTTTCAACAGAAAATGAG
AAATATCCCCCGACGATTGGCTGAAAACATGCAGCAACCACTATTTTCTTCCTGCCCCTCGTTGATGAGAGCATTCGAAGTGACCTCAGCAGGGCATCCA
GGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAAAGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATGGTACCAG
GCAGCCCAACCCTGACCTAAAGTAAATTCCCGGAAGAAGTCTTTCCTGGGTTTTGAATTTGCAGTAACAGGTGTGAGCATTCTAGCAGCAGTTTGATGAT
CATGTATGATACTGCAAACAGGACCTACGTTTAAAGAAAATGGTTGTAGTTAGTATCAGAGAGCCCTTGCTTTTCAAAACTTCATAAACAATGTTACTGT
CATGTCTTTCATTCAATAAACATTTGTTGATACATTGGCCTGACATCATGTTAAATGTTACGGATACAGAGATGAAGAAAACAGTCATGGCCCTTGTTCT
CTGGGAACTACAACCCAGTTAGGGAGACAAGGTTAAATGATCACACTTAAGAGGGCATAATTCAGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCAC
TTTGGGAGGCCGAGGCGGGTGGATCACCTGATGTCAGGAGTTCGAGACCAGTCTGGCCAACATGATGAAACCCCATTTCTACTAAAAATACAAAAAATTA
GCTGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGAGGTTGCAGGGAGCCGAG
ATCACACACACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGAGAAAAAAAAAAAAAAGTCATAATTCAGGCCGGGCACCGTGGTTAATGCCT
GTAATCCCAACACTTTGGGAGGCCGAGG

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.