Detailed information on ENST00000366365

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000366365 548 298 UTR3 Trans
ENST00000572705 transient receptor potential cation chan... protein coding ENST00000366365 520 242 UTR3 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000366365 520 242 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain... novel protein coding ENST00000366365 602 285 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000366365 541 285 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000366365 548 298 UTR3 Trans

Sequence

>ENST00000366365 (1028 nt)
CACTGACCGGGTGACCAGAGACCCAGAGACCAGACCCCCTCCACGGCGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTTTCAACAGAAAATGAG<br />AAATATCCCCCGACGATTGGCTGAAAACATGCAGCAACCACTATTTTCTTCCTGCCCCTCGTTGATGAGAGCATTCGAAGTGACCTCAGCAGGGCATCCA<br />GGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAAAGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATGGTACCAG<br />GCAGCCCAACCCTGACCTAAAGTAAATTCCCGGAAGAAGTCTTTCCTGGGTTTTGAATTTGCAGTAACAGGTGTGAGCATTCTAGCAGCAGTTTGATGAT<br />CATGTATGATACTGCAAACAGGACCTACGTTTAAAGAAAATGGTTGTAGTTAGTATCAGAGAGCCCTTGCTTTTCAAAACTTCATAAACAATGTTACTGT<br />CATGTCTTTCATTCAATAAACATTTGTTGATACATTGGCCTGACATCATGTTAAATGTTACGGATACAGAGATGAAGAAAACAGTCATGGCCCTTGTTCT<br />CTGGGAACTACAACCCAGTTAGGGAGACAAGGTTAAATGATCACACTTAAGAGGGCATAATTCAGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCAC<br />TTTGGGAGGCCGAGGCGGGTGGATCACCTGATGTCAGGAGTTCGAGACCAGTCTGGCCAACATGATGAAACCCCATTTCTACTAAAAATACAAAAAATTA<br />GCTGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGAGGTTGCAGGGAGCCGAG<br />ATCACACACACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGAGAAAAAAAAAAAAAAGTCATAATTCAGGCCGGGCACCGTGGTTAATGCCT<br />GTAATCCCAACACTTTGGGAGGCCGAGG

Expression



Full and truncated open reading frames discovered in ENST00000366365

In silico ORF/peptide predictions
>peptide 1 (99 aa)
MSGVRDQSGQHDETPFLLKIQKISWAWWHVPVIPATQEAEAGESLEPRRWRGCREPRSHTPLHSSLGNKSKTPRKKKKSHNSGRAPWLMPVIPTLWEAE

>peptide 2 (74 aa)
MRNIPRRLAENMQQPLFSSCPSLMRAFEVTSAGHPGMSSMVTKCSGQTVWGKAPVLLSLPSCGCSMVPGSPTLT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT056115 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 4.0E-16)