Detailed information on ENST00000366397

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000366397 603 293 UTR3 Trans
ENST00000506202 centrosomal protein 135kDa retained intron ENST00000366397 603 293 noncoding Trans
ENST00000560870 sense_intronic sense intronic ENST00000366397 551 269 noncoding Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000366397 543 293 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000366397 544 266 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000366397 602 290 UTR5 Trans

Sequence

>ENST00000366397 (542 nt)
CATCTCTTTTGCATTTTTTTTCCTTTGTGAGGTAAAGCAGCATTTTCCTGGCTACTCTGACTTTGCTCATGAGAAATAGTCTCATTACTATGAATGAAAT<br />GTGTGGGGATCTGATCTCTTCTAACAGCTCAGGAGTCTTTTTTTCTGAGATAGGGTTTCTCTCTGTTGCCTAGGCTGGAGTACAGTGGTGTGATCATGGC<br />TAACTGTAGCCTCGAACTCCTGGGCTCAAGTCATCCTCCTGCCTCAGCCTCCCGATAGCTGGGATTAAAGGTGCCTGCCACCACACTCAGCTAATTTTTG<br />TATTTTTAGTAGACATGGGGTTTCACCACATTGGCCACGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGAT<br />TACAGGTGTGAGCCACTGCGCCTGGCCTAGCATCGTATTTTTGAGGTTAGCCTTGCCTATTTAAAAATGTTTTGATATCTTTTTAAATCTATGGGTTCCC<br />CCTCCACCCCTTTCTTTCAAGTTATCTGTTGAAGAAGTTGGG

Expression



Full and truncated open reading frames discovered in ENST00000366397

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT137400 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N7I0|GVQW1_HUMAN (Evalue: 5.0E-23)