Detailed information on ENST00000393728

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000393728 585 257 UTR3 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000393728 580 276 UTR5 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000393728 533 283 CDS Trans
ENST00000450928 antisense antisense ENST00000393728 507 278 noncoding Trans
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 11 processed transcript ENST00000393728 511 223 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000393728 571 283 CDS_UTR Trans
ENST00000527227 NAD synthetase 1 retained intron ENST00000393728 520 258 noncoding Trans
ENST00000530055 NAD synthetase 1 protein coding ENST00000393728 520 258 UTR5 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000393728 625 265 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000393728 565 274 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000393728 630 277 UTR3 Trans
TCONS_00037379 NAD synthetase 1 novel protein coding ENST00000393728 520 258 UTR5 Trans
TCONS_00037380 NAD synthetase 1 novel protein coding ENST00000393728 520 258 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000393728 535 272 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000393728 625 265 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000393728 600 273 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000393728 600 273 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000393728 606 278 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000393728 606 278 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000393728 613 265 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000393728 534 278 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000393728 614 275 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000393728 623 271 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000393728 632 264 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000393728 611 266 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000393728 611 266 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000393728 628 279 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000393728 600 273 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000393728 600 273 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000393728 600 273 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000393728 626 270 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000393728 626 270 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000393728 626 270 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000393728 605 273 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000393728 610 275 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000393728 610 275 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000393728 607 283 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000393728 607 283 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000393728 605 275 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000393728 605 278 UTR5 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000393728 625 273 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000393728 603 272 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000393728 629 278 UTR5 Trans

Sequence

>TCONS_00249092 (2242 nt)
GGACCTTCGAAATCGCCGCCGCTCTCACAATGGCTTGGGTCCAGACTGCGCCACAGCCTCTCGGGAGACGTGGGCCCTCGGAACCTTTTTAGTGCCGGAC
TCCGGGCCGCAGGCAGTCCCGCGGCAGCAGGATCACAGAACCTCTGGATGGACTCTTCCTGGGAAGCTTTGCTACTTTGCAGCAGCTGGACCATGTTCCT
CATTAACATCTGTCTGTCCGCTTAGTCATCACATCATTTCACTGTGAAACTAAAGTTACAGAGTGGAGAGGTAACAAAAGAAGAGAGGCAGCCTGCATCA
GCCCAGTCCACCCCAAGCACCACTCCGCACTCTTCACCTAAGCAGAGGCCCAGGGGCTGGTTCACTTCTGGTTCTTCCACAGCCTTACCTGGCCCAAATC
CTAGCACCATGGACTCTGGAAGTGGGGATAAGGACAGAAACTTGTCAGATAAGTGGAGCCTCTTTGGACCGAGATCCCTTCAGAAGTACGATTCTGGAAG
TTTTGCCACCCAGGCCTACCGAGGAGCCCAGAAGCCCTCTCCATTGGAACTGATACGTGCCCAGGCCAACCGAATGGCTGAAGATCCAGCAGCCTTGAAG
CCCCCCAAGATGGACATCCCAGTGATGGAAGGAAAGAAACAGCCACCACGGGCCCATAACCTCAAACCCCGTGACCTGAATGTGCTCACACCCACTGGCT
TCTAGAGCCCTCTTTCCAGGGATTCTGGTAAAGGTGGTTTCTTGCATCCCACTCCCCTTTTACCTTGGCTTTGACATAGGAAAGGTATATTTAAAAACTT
AATCAGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTAGGTGGATACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAA
CATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATC
GCCTGAACCCAGGAAGCAGATGTTGTACCGAGCTGAGATCATGCCATTACACTCCAGCCTGGGCGACAGAACGAGACGCCATCAATAAATAAATAAATAA
AGTAAAGTAAAAAACCTATTAAATTGAGGCTAGAGCTGGAGATGTAATTGGTTTTTGAGAAACATTAGTATAAAGCTTGCCCTTGTTGTGTGGAAGAAGC
CATTTTGTACTGCTTTAAAGTTAGACTAATATTCTCAGCACGGGTGTATGGGGACCTCATTACCTATTTTTTTCATCATTTACCCTAGGTAAGAACTTTG
ATCACTGCTTACTAGGTAAAGAATGTTTGTACTGTTCCAAAACCCAGGCTTCTTTATTCCTTTACCACTATCCATGTGAGCATTGACAAATCATGGCTTA
GAGGTGCTCACTGACTCGCTAAGACGACTTTGGCCCTGTTGATGACTGGTGCTGTGCTCCAGCCTTATCAGTTAGGGGACCCAAGGTTTGTTTGGGACCT
GGGTACAGGTAAAAGCCAGACTTGGCAGGGACCCCTCTTTCTAGGCTGAACCTTGAGTCCCCCTGCTTTTTGGCAGACCTAATGGATCACTGTCTTGCAG
CTAGTTCTTCATGTGGGGCCTCTTAGGCCAGTGCCGGAGGAGGCATGCTCCTCTTTCTATGCCACAGAACAAACACTACTCTAGCAGAGCCTTTCTTGCA
CTTTAAAGTGAGATTAATTTAGCTGTAATTTGGTTAAAAACTTCCTAAGAGAGAAAATTAAGTCTACTGATTTGGTATAGGTAAATGGACATTAAACTTT
TTTAAAGTAAAGGAGATGGTAGATACCGTTAGATTATAGTCTTGAGGTTCATGTGAAGCCAGTGGTGTTAACTTACTTTGATTTCCTTGTTCAGGTCAGG
GCCTGGAACGCCTGTGCGGGGAGGTCACTCAATTCAAAATTTTCTGTATGAAAGCATTTTTCACCAAAATGAGCCTCATCCCTTTATGCAACACATAACC
TTACTGAGGGAGGGAAATACAGAAGCCACCTTTTTATTTCTCTTCACTGTGTACAAGTTCACTTGTTGTCTTGAACACTGTCTCAAATACCTGCTTTTTG
TTTTGGATAGTACCTTGTCTGTATAAGAAGCTGGCCTTTCCATAGAGAGGCCCTGGAGTCTAAAATTATGAGAACAATTAATTTATTTGTGTCTTCTATT
ATGATCTCGTTTTGACAATAAAAATCCTTACTACTTTCTCAAA

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.