Detailed information on ENST00000396233

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000396233 531 263 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000396233 535 248 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000396233 523 265 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000396233 518 263 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000396233 601 262 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000396233 608 264 noncoding Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000396233 606 263 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000396233 606 263 UTR5 Trans

Sequence

>TCONS_00194655 (1304 nt)
AGGAATATGGGCCGAGGGTGATATTTCACTGAGACAGCCCCTGAACAGGCAGATATCTTTGGTTGTATAAACCAAAAAGTATCTGAGACAGGTCTCAATC
AATTGAGAAGTTTATTTTGCCAAGGTTAGGGACACATCCAGAAGCAAAGAACACGGAATCATAGAAACCGTCTGTGGCGTGTACCTTTCTTCAAAGATGA
TTTGGAGGGCTTCAGTATTTAAAGGAGAAAAGCAGGCTGGAGGGGAAAGAGGGAAGTTCTGGTAATCACATGTTGCAGGAGAAAAGGCGCAGGCAGGGGA
AGTCAGTTATGTATTCTTCCTGCGCTCAGTAAGTCAGCACTTTCTATAAGATAAGGTGGACATAGAGGAACTACCTGTGGAGATATTTCAGCTTTTATCT
GTATCTATCTGCTTACTAAAGAAACAAAAGGAAAGGCAGCTTGCACAACTCAGCTTCAGCTTAAATTGTTCCTTTTGGCATTGTGAATCGTGGTCCTAGT
TTTTATTTTCCTTTCACAGATGGGAGCAGTGTGATGATTTATTTATTTATTTGAGACAGAATCCCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTAAT
CTTGGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGCGTGCACCACCACGCCCAGCTA
ACTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTAATCTGCCCGCCTCGTCCTCCCAAACTG
CTGGGATTACAGAGCAGGGTGATGATTGTTGATGCTGCACTTGCCCTTTTAGAAATCTTAGCACTCATTTTGAGGGTTCTAGATGCCAATTTCATTTTGC
CTCTGGATGCTTTGTCTGCTTCCAATCTCTCACCTTGCTGCCCAGTCAGTCCCTTCTTGGGAAATGCATCCACCTTGGATTTTTTGGGGCTAGAGCCCAG
CCTTTAACCTGTGCTTGCTTTTGAAGATACATGATCACGGATATCATCGGGAAGGATGATGGCTTGGGCGTGGAGAATCTGAGGGGCTCAGGCATGATTG
CTGGGGAGTCCTCTCTGGCTTACGAAGAGATCGTCACCATTAGCTTGGTGACCTGCCGAGCCATTGGGATTGGGGCCTACTTGGTGAGGCTGGGCCAGCG
AGTGATCCAGGTGGAGAATTCCCACATCATCCTCACAGGAGCAAGTGCTCTCAACAAGGTCCTGGGAAGAGAGGTCTACACATCCAACAACCAGCTGGGT
GGCGT

Expression



Full and truncated open reading frames discovered in TCONS_00194655

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.